True's beaked whale.jpg

Western spotted skunk

Hooded skunk

Yellow-throated Marten

Wolverine

Archive for the ‘links’ Category

Links for October 2015

Wednesday, October 7th, 2015

More guns means more people shot
How to sequence and assemble a large eukaryote genome with long reads in 2015
Convert between RefSeq and Ensembl Transcript
Ion Torrent S5, $65k, between Proton and PGM in capability, 200bp reads in 2.5 hrs

Podcasts:
Stuff You Should Know
Stuff You Missed in History Class
HOW TO DO EVERYTHING
Skeptics’ Guide to the Universe

50 despicable things George W. Bush did before and after 9/11
Oak leaf mites bite humans this year

Beer:
Practical Porter
Beer Styles: Making a Porter Recipe

Links for September 2015

Friday, September 4th, 2015

Japanese zoning. Allow mixed land use by design, up to a maximum use for each zone. Contrasted with US Euclidian zoning.
India’s Subterranean Stepwells
Solidarity Squandered by Rick Perlstein. The attacks brought us together until we let them turn us against each other–and damn near everyone else.
Article on the culture of Iceland and how it intersects with the 2008 bankruptcy crisis, “Wall Street on the Tundra” J
by MICHAEL LEWIS, APRIL 2009

Illinois good hiking spots
Pics of a WWI German sub (sunk and recovered by the British–all Steampunk
Rethinking government debt by Frances Coppola. Covers the economics of money and debt.
God damn letter sent to Abraham Lincoln
Virus GBV-C protects somewhat against AIDs

Links for August 2015

Saturday, August 1st, 2015

Colourlex: pigments and paintings
Dietary pesticides (99.99% all natural) (pdf)

The toxicological significance of exposures to synthetic chemicals is examined in the context of exposures to naturally occurring chemicals. We calculate that 99.99% (by weight) of the pesticides in the American diet are chemicals that plants produce to defend themselves. Only 52 natural pesticides have been tested in high-dose animal cancer tests, and about half (27) are rodent carcinogens; these 27 are shown to be present in many common foods. We conclude that natural and synthetic chemicals are equally likely to be positive in animal cancer tests. We also conclude that at the low doses of most human exposures the comparative hazards of synthetic pesticide residues are insignificant.

“Racism and Science Fiction” by Samuel R. Delany
Genetics of color, COLOUR AND PATTERN CHARTS
Sarah Hartwell

Info on college costs from the National Center for Education Statistics (NCES)
A genome-wide analysis of putative functional and exonic variation associated with extremely high intelligence. Spain et. al., 2015. Molecular Psychiatry

Although individual differences in intelligence (general cognitive ability) are highly heritable, molecular genetic analyses to date have had limited success in identifying specific loci responsible for its heritability. This study is the first to investigate exome variation in individuals of extremely high intelligence. Under the quantitative genetic model, sampling from the high extreme of the distribution should provide increased power to detect associations. We therefore performed a case–control association analysis with 1409 individuals drawn from the top 0.0003 (IQ >170) of the population distribution of intelligence and 3253 unselected population-based controls. Our analysis focused on putative functional exonic variants assayed on the Illumina HumanExome BeadChip. We did not observe any individual protein-altering variants that are reproducibly associated with extremely high intelligence and within the entire distribution of intelligence. Moreover, no significant associations were found for multiple rare alleles within individual genes. However, analyses using genome-wide similarity between unrelated individuals (genome-wide complex trait analysis) indicate that the genotyped functional protein-altering variation yields a heritability estimate of 17.4% (s.e. 1.7%) based on a liability model. In addition, investigation of nominally significant associations revealed fewer rare alleles associated with extremely high intelligence than would be expected under the null hypothesis. This observation is consistent with the hypothesis that rare functional alleles are more frequently detrimental than beneficial to intelligence.

In the modern Republican Party, making sense is a secondary consideration. Years of relentless propaganda combined with extreme frustration over the disastrous Bush years and two terms of a Kenyan Muslim terrorist president have cast the party’s right wing into a swirling suckhole of paranoia and conspiratorial craziness. There is nothing you can do to go too far, a fact proved, if not exactly understood, by the madman, Trump.


First octopus genome published: California two-spot octopus, Octopus bimaculoides


Pentagon tiling discovery.

pentagon tiling examples


Hugo awards 2015!
Yea, the asshole muckers lost! Nice to see Orphan Black win.

What the alternate Hugo Ballot would likely have been Good source for my TO READ list.


Flying Spaghetti Monster propaganda materials

HTTP error codes in cat gifs

Scientists who found gluten sensitivity evidence have now shown it doesn’t exist. Follow up study by Peter Gibson at Monash University in Australia to his 2011 paper

Links for July 2015

Friday, July 3rd, 2015

Short and succinct argument for removing ten Commandments from public spaces.
Orac on ‘integrative medicine’
Recommended economics books by Brad DeLong
Lyme disease, common and dangerous
Trump’s short and long cons
The myths of bioinformatics software
Were Republicans really the party of civil rights in the 1960s?
History of British slave ownership

Links for June 2015

Wednesday, June 10th, 2015

Pseudoscience: IgG Food Intolerance Tests
William Thompson, the Savannah, Georgia Daily Morning News editor who designed the Confederate flag describes its racist meaning
What the rich want, everyone in the US gets. Survey data
Making Leavers machine lace
Why early Chlamydia vaccines failed (and lowered resistance to Chlamydia)

Links for May 2015

Monday, May 11th, 2015

Analysis: Over Half of All Statements Made on Fox News Are False
Lokiarchaeota, an archea, is the closest relative to eukaryotes
Carl Zimmer on the biological mathematics of long bamboo flowering cycles (120 years!)
Paramagnetic fluid

Links for April 2015

Wednesday, April 1st, 2015

NPR Enables The Anti-Worker Movement
Economics blog: Beat the Press (Dean Baker)
Purple frog
Ultrasound Alzheimer’s treatment fully restores memory function. pub link. Worth following up in a year
Welfare that the well off get
Medzhitov / Galli theory that allergies are a response to toxic chemicals
Family firms
Survey of gun researchers: having a gun increases your risk

Links for March 2015

Thursday, March 5th, 2015

Ending the Creditor’s Paradise
First detailed microscopy evidence of bacteria at the lower size limit of life (0.2 um, 1/150th size of an E. coli) (paper)
Best Feminist Books For Younger Readers
Cold-brewed chocolate
A Chladni plate experiment–visualizes complex resonance patterns
Fuse glass in a microwave and metals
Variant annotation: ANNOVAR vs VEP: McCarthy et. al., 2014, pdf, suppl.
Blog post with a comparison: State of Variant Annotation: A Comparison of AnnoVar, snpEff and VEP by Andrew Jesaitis
TIP – Troubles in Paradise (history of creationist argumentation)
The Irrationality of Alcoholics Anonymous–using naltrexone to treat alcoholism
Krugman reports on the Republican budget proposal
A Scientist’s Guide to Citizen Science

Links for February 2015

Tuesday, February 3rd, 2015

Comic: Phoebe and Her Unicorn
Illumina sequencer comparison: XTen, HiSeq 2500, NextSeq 500, MiSeq
NextSeq 500, an odd choice
How fast is your flash? Measuring high-speed flashes
Plans for an air-gap flash
The Infection Schedule versus the Vaccination Schedule by Mark Crislip. Comparing the antigens in a vaccine to the number a person responds to in ordinary life.
Elysium Health (Guarente) has a NAD precursor + sirulin targeting anti-oxidant, $2/day
VAX! A game about epidemic prevention.
Roald Dahl on Olivia, writing in 1988. “MEASLES: A dangerous illness.”
UPC codes for a product, inexpensive from a reseller
USB id for a product, inexpensive from a reseller
NGS machine comparison

2015 Nebula award speculation

Origin of the $ sign

Converting files avi to mp4

Links for January 2015

Friday, January 2nd, 2015

Designing The Best Board Game On The Planet: Twilight Struggle by Oliver Roeder
After 10 years, few payoffs from Gates’ ‘Grand Challenges’
the Mincome experiment in Dauphin, Manitoba, 19774-1979
State tax rates 2014
International SAT is Corrupt.
Great Commodore 64 game: The Castles of Dr. Creep (rewrite, description)
Science and the AAAS sell their souls to promote pseudoscience in medicine by Orac, link to Science advert Supplement
Bat hibernation, muted immune response, and aging
More Rotavirus Vaccination Means Less Rotavirus, paywalled article Sahni et al., 2015 in Pediatrics
Cooking charts
Pioneer Girl by Laura Ingalls Wilder review